Results for job id S13786

Job information:
Job id: S13786
Job name: docking trem1-m3
Job starting time: 2024-07-31 04:52:41
Job ending time: 2024-07-31 05:25:44
Peptide sequence: RGFFRGG
Protein receptor structure: rec_clean.pdb


Top 10 predicted binding modes
Predicted models are ranked by a knowledge-based scoring function, ITScorePeP.
Click the "View" button on the right panel to display the corresponding binding mode.
Models Active View ITScorePeP Download
Model 1

-122.2 Download
Model 2

-121.4 Download
Model 3

-121.3 Download
Model 4

-119.6 Download
Model 5

-119.3 Download
Model 6

-119.0 Download
Model 7

-118.0 Download
Model 8

-116.9 Download
Model 9

-115.3 Download
Model 10

-114.0 Download

Download
Click HERE to download all the results.

Note: Use ViewDock option in Chimera to display and analyze results on your local machine:
1) Open Chimera and click "Menu: File ... open" to open the receptor pdb file ("rec_clean.pdb");
2) Click "Menu: Tools ... Surface/Binding Analysis ... ViewDock" to open ViewDock and load the predicted peptide binding modes (e.g. "Top10_pep_models.pdb"). Once the file is successfully loaded, the program will ask for the file type. Choose "Dock 4, 5 or 6".