Results for job id S14633
Job information:
Job id: S14633
Job name: MD_gg_1
Job starting time: 2025-02-05 02:58:38
Job ending time: 2025-02-05 03:12:40
Peptide sequence: AGGDL
Protein receptor structure: rec_clean.pdb
Top 10 predicted binding modes
Predicted models are ranked by a knowledge-based scoring function, ITScorePeP.
Click the "View" button on the right panel to display the corresponding binding mode.
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| Models | Active | View | ITScorePeP | Download |
| Model 1 | -57.2 | Download | ||
| Model 2 | -55.2 | Download | ||
| Model 3 | -53.1 | Download | ||
| Model 4 | -50.5 | Download | ||
| Model 5 | -50.4 | Download | ||
| Model 6 | -49.7 | Download | ||
| Model 7 | -48.6 | Download | ||
| Model 8 | -48.4 | Download | ||
| Model 9 | -47.3 | Download | ||
| Model 10 | -46.7 | Download |
Download
Click HERE to download all the results.
Note: Use ViewDock option in Chimera to display and analyze results on your local machine:
1) Open Chimera and click "Menu: File ... open" to open the receptor pdb file ("rec_clean.pdb");
2) Click "Menu: Tools ... Surface/Binding Analysis ... ViewDock" to open ViewDock and load the predicted peptide binding modes (e.g. "Top10_pep_models.pdb"). Once the file is successfully loaded, the program will ask for the file type. Choose "Dock 4, 5 or 6".