Results for job id S12079
Job information:
Job id: S12079
Job name: 3-4-29
Job starting time: 2023-09-07 06:33:45
Job ending time: 2023-09-07 21:55:55
Peptide sequence: RKQVRKMKKLEKKFF
Protein receptor structure: rec_clean.pdb
Top 10 predicted binding modes
Predicted models are ranked by a knowledge-based scoring function, ITScorePeP.
Click the "View" button on the right panel to display the corresponding binding mode.
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| Models | Active | View | ITScorePeP | Download |
| Model 1 | -261.6 | Download | ||
| Model 2 | -253.6 | Download | ||
| Model 3 | -252.2 | Download | ||
| Model 4 | -250.6 | Download | ||
| Model 5 | -247.2 | Download | ||
| Model 6 | -246.8 | Download | ||
| Model 7 | -245.5 | Download | ||
| Model 8 | -244.9 | Download | ||
| Model 9 | -244.4 | Download | ||
| Model 10 | -243.5 | Download |
Download
Click HERE to download all the results.
Note: Use ViewDock option in Chimera to display and analyze results on your local machine:
1) Open Chimera and click "Menu: File ... open" to open the receptor pdb file ("rec_clean.pdb");
2) Click "Menu: Tools ... Surface/Binding Analysis ... ViewDock" to open ViewDock and load the predicted peptide binding modes (e.g. "Top10_pep_models.pdb"). Once the file is successfully loaded, the program will ask for the file type. Choose "Dock 4, 5 or 6".