Results for job id S12108
Job information:
Job id: S12108
Job name: env5
Job starting time: 2023-09-10 15:16:40
Job ending time: 2023-09-10 23:18:35
Peptide sequence: VKPSFYVYSRVKNLN
Protein receptor structure: rec_clean.pdb
Top 10 predicted binding modes
Predicted models are ranked by a knowledge-based scoring function, ITScorePeP.
Click the "View" button on the right panel to display the corresponding binding mode.
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Models | Active | View | ITScorePeP | Download |
Model 1 | -277.6 | Download | ||
Model 2 | -253.9 | Download | ||
Model 3 | -251.3 | Download | ||
Model 4 | -246.7 | Download | ||
Model 5 | -245.7 | Download | ||
Model 6 | -243.4 | Download | ||
Model 7 | -243.3 | Download | ||
Model 8 | -242.9 | Download | ||
Model 9 | -240.3 | Download | ||
Model 10 | -237.8 | Download |
Download
Click HERE to download all the results.
Note: Use ViewDock option in Chimera to display and analyze results on your local machine:
1) Open Chimera and click "Menu: File ... open" to open the receptor pdb file ("rec_clean.pdb");
2) Click "Menu: Tools ... Surface/Binding Analysis ... ViewDock" to open ViewDock and load the predicted peptide binding modes (e.g. "Top10_pep_models.pdb"). Once the file is successfully loaded, the program will ask for the file type. Choose "Dock 4, 5 or 6".