Results for job id S12997
Job information:
Job id: S12997
Job name: H2-Kb + peptide
Job starting time: 2024-02-19 23:51:16
Job ending time: 2024-02-20 00:11:48
Peptide sequence: SKAGKDG
Protein receptor structure: rec_clean.pdb
Top 10 predicted binding modes
Predicted models are ranked by a knowledge-based scoring function, ITScorePeP.
Click the "View" button on the right panel to display the corresponding binding mode.
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| Models | Active | View | ITScorePeP | Download |
| Model 1 | -118.1 | Download | ||
| Model 2 | -114.8 | Download | ||
| Model 3 | -107.7 | Download | ||
| Model 4 | -106.6 | Download | ||
| Model 5 | -102.2 | Download | ||
| Model 6 | -100.5 | Download | ||
| Model 7 | -99.3 | Download | ||
| Model 8 | -97.1 | Download | ||
| Model 9 | -96.7 | Download | ||
| Model 10 | -96.3 | Download |
Download
Click HERE to download all the results.
Note: Use ViewDock option in Chimera to display and analyze results on your local machine:
1) Open Chimera and click "Menu: File ... open" to open the receptor pdb file ("rec_clean.pdb");
2) Click "Menu: Tools ... Surface/Binding Analysis ... ViewDock" to open ViewDock and load the predicted peptide binding modes (e.g. "Top10_pep_models.pdb"). Once the file is successfully loaded, the program will ask for the file type. Choose "Dock 4, 5 or 6".