Results for job id S13139
Job information:
Job id: S13139
Job name: E_Pals1 3D lig
Job starting time: 2024-03-23 16:20:53
Job ending time: 2024-03-23 16:44:48
Peptide sequence: RVPDLLV
Protein receptor structure: rec_clean.pdb
Top 10 predicted binding modes
Predicted models are ranked by a knowledge-based scoring function, ITScorePeP.
Click the "View" button on the right panel to display the corresponding binding mode.
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| Models | Active | View | ITScorePeP | Download |
| Model 1 | -97.9 | Download | ||
| Model 2 | -97.6 | Download | ||
| Model 3 | -95.1 | Download | ||
| Model 4 | -92.4 | Download | ||
| Model 5 | -89.5 | Download | ||
| Model 6 | -88.0 | Download | ||
| Model 7 | -87.7 | Download | ||
| Model 8 | -87.1 | Download | ||
| Model 9 | -85.5 | Download | ||
| Model 10 | -85.0 | Download |
Download
Click HERE to download all the results.
Note: Use ViewDock option in Chimera to display and analyze results on your local machine:
1) Open Chimera and click "Menu: File ... open" to open the receptor pdb file ("rec_clean.pdb");
2) Click "Menu: Tools ... Surface/Binding Analysis ... ViewDock" to open ViewDock and load the predicted peptide binding modes (e.g. "Top10_pep_models.pdb"). Once the file is successfully loaded, the program will ask for the file type. Choose "Dock 4, 5 or 6".