MDock Server University of Missouri
Ligand structure The server allows users to upload a ligand structure as one of the initial structures for docking. Please note the server only recognizes the mol2 format for the ligand structure. An example of the inputs (mol2: Progesterone): Ligand structure: Progesterone.mol2
After a job is submitted, the MDock Server will immediately examine the uploaded files. A pop-up page will inform the user whether the job is successfully submitted. If not, the ERROR information will be reported on this page. Once the job is successfully submitted, the job status is monitored on the "Queue" page. When the job is waiting for computational resource allocation, the job status is "Pending". Once the job starts to run, the status will be changed to "Running". The user will receive an email (if provided) notification after the job is completed. Then, the status will be changed to "Done" or "Error". Note: If the user selects the option "Do not show my job on the queue page" on the submission page, the job status will not appear on the "Queue" page. In this case, the only way to know the status is through email notification.
